Combine multiple sequences
seq_combine(..., sep = "", collapse = NULL)One or more vectors of sequences (DNA, RNA, AA). They must all be of the same type. Short vectors are recycled.
String to insert between input vectors.
If not NULL, combine everything with this
string as separator.
A vector of sequences (if collapse is NULL).
A vector with a single sequence, otherwise.
The strings sep and collapsew ill be coerced to
the type of input vectors with a warning if some character have to replaced.
stri_join from stringi and
str_c from stringr
for the underlying implementation.
Other string operations:
seq-replace,
seq_count_pattern(),
seq_crop_pattern(),
seq_crop_position(),
seq_detect_pattern(),
seq_extract_pattern(),
seq_extract_position(),
seq_remove_pattern(),
seq_remove_position(),
seq_replace_position(),
seq_split_kmer(),
seq_split_pattern()
x <- dna("ACGTTAGTGTAGCCGT", "CTCGAAATGA")
y <- dna("TTTTTTTT", "AAAAAAAAA")
seq_combine(x, y)
#> DNA vector of 2 sequences
#> > ACGTTAGTGTAGCCGTTTTTTTTT
#> > CTCGAAATGAAAAAAAAAA
seq_combine(y, x, sep = "CCCCC")
#> DNA vector of 2 sequences
#> > TTTTTTTTCCCCCACGTTAGTGTAGCCGT
#> > AAAAAAAAACCCCCCTCGAAATGA
seq_combine(y, x, sep = "CCCCC", collapse = "GGGGG")
#> DNA vector of 1 sequences
#> > TTTTTTTTCCCCCACGTTAGTGTAGCCGTGGGGGAAAAAAAAACCCCCCTCGAAATGA