Export reference database for Mothur — refdb_export

Write a reference database in formats which can be used with Mothur.

refdb_export_mothur(x, file)

Arguments

x: a reference database.
file: a file path. This will be used to create a .fasta file and a .txt file.

Value

No return value, called for side effects.

Examples

lib <- read.csv(system.file("extdata", "baetidae_bold.csv", package = "refdb"))
lib <- refdb_set_fields_BOLD(lib)
refdb_export_mothur(lib, tempfile())