Convert bioseq DNA, RNA and AA to tibble — as-tibble-bioseq • bioseq

Convert bioseq DNA, RNA and AA to tibble

as_tibble.bioseq_dna(x, label = "label", sequence = "sequence", ...)

as_tibble.bioseq_rna(x, label = "label", sequence = "sequence", ...)

as_tibble.bioseq_aa(x, label = "label", sequence = "sequence", ...)

Arguments

x: a DNA, RNA or AA vector.
label: Name of the column that stores the sequence labels in the returned tibble.
sequence: Name of the column that stores the sequences in the returned tibble.
...: Not used.

Value

A tibble with two columns (if name is not NULL, the default) or one column (otherwise).

See also

Other conversions: as-tibble-ape, as_AAbin(), as_DNAbin(), as_aa(), as_dna(), as_rna(), as_seqinr_alignment()

Examples


require(tibble)
x <- dna(A = "ACGTTAGTGTAGCCGT", B = "CTCGAAATGA", C = NA)
as_tibble(x)
#> # A tibble: 3 × 1
#>   value           
#>   <DNA>           
#> 1 ACGTTAGTGTAGCCGT
#> 2 CTCGAAATGA      
#> 3 NA